alphafold3 (Deepmind Technologies Ltd)

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Deepmind Technologies Ltd alphafold3
Alphafold3, supplied by Deepmind Technologies Ltd, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/alphafold3/alphafold3/pmc13264254-140-9-11
Average 86 stars, based on 1 article reviews

alphafold3 - by Bioz Stars, 2026-09

86/100 stars

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Construct:

Article Title: Transcription cofactor Hes6 interacts with Twist1 to facilitate EMT and promote gastric carcinogenesis by activating the PI3K/AKT signaling
Article Snippet: .. Subsequently, we used the protein modeling prediction function of AlphaFold3 ( https://deepmind.google/technologies/alphafold/ ) to construct an online protein interaction model of Hes6 and Twist1, and analyzed the contact residues and hydrogen bond interactions on the binding surface of the two molecules through molecular docking fitting ( B; ). ..

Binding Assay:

Article Title: Peptide occupancy governs HLA-E checkpoint interactions enabling VISTA recognition of destabilized HLA-E conformers.
Article Snippet: .. We then utilized AlphaFold3 (Google DeepMind) to predict the binding site of HLA-E and VISTA (22). ..

Generated:

Article Title: Heterotrimeric G protein αi2 Sequesters RasGAP to Control Neutrophil Sensitivity and Chemotaxis
Article Snippet: The membranes were incubated with the secondary antibodies by following the manufacturer’s instructions, washed three times with TBS-T for 10 min and subjected to detection of the indicated protein using the substrates of HRP (Life Technology, Carlsbad, CA). .. Protein–protein complex models were generated using AlphaFold3 (DeepMind, 2024) installed as singularity container with af3 wrapper script ( https://github.com/NIH-HPC/af3 ) on the NIH Biowulf high-performance computing cluster. .. Model parameters were downloaded from Google DeepMind with permission for non-commercial use.

Software:

Article Title: Notch signaling-targeted biomimetic hydrogel constructs an anti-inflammatory “flood-control” system to alleviate pyroptosis for intervertebral disc degeneration treatment
Article Snippet: .. The 3D structure was predicted with AlphaFold3 (DeepMind, UK) software and optimized via Rosetta Relax (University of Washington, USA). ..

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